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java_toolchain.md: apk_under_test, generated files, static analysis

Bug: 916880
Change-Id: I623ce658212173c116780d5816d0de8733acac65
Reviewed-on: https://chromium-review.googlesource.com/c/chromium/src/+/1878612
Commit-Queue: Andrew Grieve <agrieve@chromium.org>
Reviewed-by: Eric Stevenson <estevenson@chromium.org>
Cr-Commit-Position: refs/heads/master@{#712667}