[Refactor Xcode Objects] Decouple file references and indexing target.
Previously, whenever a file reference needs to be added for indexing, a default target with the same name as the project is always assumed to be the one to bound to. This CL decouples file references from the default indexing target, and allows file references to be bound to any of the native targets. BUG=614818 Review-Url: https://codereview.chromium.org/2577753002 Cr-Commit-Position: refs/heads/master@{#439894}
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